open-source matlab-based package Search Results


open-source matlab package  (MathWorks Inc)
90
MathWorks Inc open-source matlab package
Open Source Matlab Package, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab-based free open source software package  (MathWorks Inc)
90
MathWorks Inc matlab-based free open source software package
Matlab Based Free Open Source Software Package, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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open-source matlab-based package with a graphical user interface (gui)  (MathWorks Inc)
90
MathWorks Inc open-source matlab-based package with a graphical user interface (gui)
Open Source Matlab Based Package With A Graphical User Interface (Gui), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab-based open source software package  (MathWorks Inc)
90
MathWorks Inc matlab-based open source software package
Matlab Based Open Source Software Package, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab-based open source software package - by Bioz Stars, 2026-03
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plustiptracker  (MathWorks Inc)
90
MathWorks Inc plustiptracker
Inhibition of CKI suppresses microtubule growth in epithelial cells. (A, left) Cytoplasmic cell extracts (CCE) of RPE1 cells were processed for immunoprecipitation (ip) with random IgG (control [con]) or anti-p150 glued (p150 glued ) antibodies. (right) Cytoplasmic cell extracts of RPE1 cells were subjected to pull-down assays with GST, GST-EB1 (EB1), or GST-EB3 (EB3) and were immunoblotted with antibodies as indicated. Recombinant GST products are visible in Ponceau S staining below. WB, Western blotting. (B) Analysis of EB3-GFP comets in Jurkat cells treated with DMSO or 100 µM D4476. The box plot shows the distribution of mean growth speeds of tracked EB3-GFP comets per cell. (C) Microtubules were depolymerized on ice in DMSO- or 50 µM D447-treated RPE1 cells. Cells were then shifted to 37°C for 10 min to allow microtubule polymerization. Cells are stained with anti–α-tubulin antibodies. Bar, 10 µm. (D) Number of EB3-GFP growth tracks in DMSO- or 25 µM D4476-treated RPE1 cells. The box plot shows the number of EB3-GFP growth tracks per cell. (E) Analysis of EB3-GFP comets in RPE1 cells treated with DMSO or 25 µM D4476. (left) The box plot shows distribution of mean growth speeds of tracked EB3-GFP comets per cell. (right) The table lists microtubule dynamic parameters by <t>plusTipTracker.</t> Pshrink indicates the probability of shrinkage at the end of grouped growth tracks. Pgrowth and Pfgap indicate the percentage of time all microtubules spend in growth or in pause between growth phases, respectively. **, P < 0.0001; # , P = 0.05 (using permutation t tests). In box plots, whiskers are set at 5–95 percentiles; horizontal lines mark the median, and boxes indicate interquartile range (25–75%).
Plustiptracker, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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wec-sim package  (MathWorks Inc)
90
MathWorks Inc wec-sim package
Inhibition of CKI suppresses microtubule growth in epithelial cells. (A, left) Cytoplasmic cell extracts (CCE) of RPE1 cells were processed for immunoprecipitation (ip) with random IgG (control [con]) or anti-p150 glued (p150 glued ) antibodies. (right) Cytoplasmic cell extracts of RPE1 cells were subjected to pull-down assays with GST, GST-EB1 (EB1), or GST-EB3 (EB3) and were immunoblotted with antibodies as indicated. Recombinant GST products are visible in Ponceau S staining below. WB, Western blotting. (B) Analysis of EB3-GFP comets in Jurkat cells treated with DMSO or 100 µM D4476. The box plot shows the distribution of mean growth speeds of tracked EB3-GFP comets per cell. (C) Microtubules were depolymerized on ice in DMSO- or 50 µM D447-treated RPE1 cells. Cells were then shifted to 37°C for 10 min to allow microtubule polymerization. Cells are stained with anti–α-tubulin antibodies. Bar, 10 µm. (D) Number of EB3-GFP growth tracks in DMSO- or 25 µM D4476-treated RPE1 cells. The box plot shows the number of EB3-GFP growth tracks per cell. (E) Analysis of EB3-GFP comets in RPE1 cells treated with DMSO or 25 µM D4476. (left) The box plot shows distribution of mean growth speeds of tracked EB3-GFP comets per cell. (right) The table lists microtubule dynamic parameters by <t>plusTipTracker.</t> Pshrink indicates the probability of shrinkage at the end of grouped growth tracks. Pgrowth and Pfgap indicate the percentage of time all microtubules spend in growth or in pause between growth phases, respectively. **, P < 0.0001; # , P = 0.05 (using permutation t tests). In box plots, whiskers are set at 5–95 percentiles; horizontal lines mark the median, and boxes indicate interquartile range (25–75%).
Wec Sim Package, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab-based, open-source package with a graphical user interface (gui)  (MathWorks Inc)
90
MathWorks Inc matlab-based, open-source package with a graphical user interface (gui)
Inhibition of CKI suppresses microtubule growth in epithelial cells. (A, left) Cytoplasmic cell extracts (CCE) of RPE1 cells were processed for immunoprecipitation (ip) with random IgG (control [con]) or anti-p150 glued (p150 glued ) antibodies. (right) Cytoplasmic cell extracts of RPE1 cells were subjected to pull-down assays with GST, GST-EB1 (EB1), or GST-EB3 (EB3) and were immunoblotted with antibodies as indicated. Recombinant GST products are visible in Ponceau S staining below. WB, Western blotting. (B) Analysis of EB3-GFP comets in Jurkat cells treated with DMSO or 100 µM D4476. The box plot shows the distribution of mean growth speeds of tracked EB3-GFP comets per cell. (C) Microtubules were depolymerized on ice in DMSO- or 50 µM D447-treated RPE1 cells. Cells were then shifted to 37°C for 10 min to allow microtubule polymerization. Cells are stained with anti–α-tubulin antibodies. Bar, 10 µm. (D) Number of EB3-GFP growth tracks in DMSO- or 25 µM D4476-treated RPE1 cells. The box plot shows the number of EB3-GFP growth tracks per cell. (E) Analysis of EB3-GFP comets in RPE1 cells treated with DMSO or 25 µM D4476. (left) The box plot shows distribution of mean growth speeds of tracked EB3-GFP comets per cell. (right) The table lists microtubule dynamic parameters by <t>plusTipTracker.</t> Pshrink indicates the probability of shrinkage at the end of grouped growth tracks. Pgrowth and Pfgap indicate the percentage of time all microtubules spend in growth or in pause between growth phases, respectively. **, P < 0.0001; # , P = 0.05 (using permutation t tests). In box plots, whiskers are set at 5–95 percentiles; horizontal lines mark the median, and boxes indicate interquartile range (25–75%).
Matlab Based, Open Source Package With A Graphical User Interface (Gui), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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cellprofiler  (MathWorks Inc)
90
MathWorks Inc cellprofiler
Inhibition of CKI suppresses microtubule growth in epithelial cells. (A, left) Cytoplasmic cell extracts (CCE) of RPE1 cells were processed for immunoprecipitation (ip) with random IgG (control [con]) or anti-p150 glued (p150 glued ) antibodies. (right) Cytoplasmic cell extracts of RPE1 cells were subjected to pull-down assays with GST, GST-EB1 (EB1), or GST-EB3 (EB3) and were immunoblotted with antibodies as indicated. Recombinant GST products are visible in Ponceau S staining below. WB, Western blotting. (B) Analysis of EB3-GFP comets in Jurkat cells treated with DMSO or 100 µM D4476. The box plot shows the distribution of mean growth speeds of tracked EB3-GFP comets per cell. (C) Microtubules were depolymerized on ice in DMSO- or 50 µM D447-treated RPE1 cells. Cells were then shifted to 37°C for 10 min to allow microtubule polymerization. Cells are stained with anti–α-tubulin antibodies. Bar, 10 µm. (D) Number of EB3-GFP growth tracks in DMSO- or 25 µM D4476-treated RPE1 cells. The box plot shows the number of EB3-GFP growth tracks per cell. (E) Analysis of EB3-GFP comets in RPE1 cells treated with DMSO or 25 µM D4476. (left) The box plot shows distribution of mean growth speeds of tracked EB3-GFP comets per cell. (right) The table lists microtubule dynamic parameters by <t>plusTipTracker.</t> Pshrink indicates the probability of shrinkage at the end of grouped growth tracks. Pgrowth and Pfgap indicate the percentage of time all microtubules spend in growth or in pause between growth phases, respectively. **, P < 0.0001; # , P = 0.05 (using permutation t tests). In box plots, whiskers are set at 5–95 percentiles; horizontal lines mark the median, and boxes indicate interquartile range (25–75%).
Cellprofiler, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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open-source matlab-based package (wuflux)  (MathWorks Inc)
90
MathWorks Inc open-source matlab-based package (wuflux)
Inhibition of CKI suppresses microtubule growth in epithelial cells. (A, left) Cytoplasmic cell extracts (CCE) of RPE1 cells were processed for immunoprecipitation (ip) with random IgG (control [con]) or anti-p150 glued (p150 glued ) antibodies. (right) Cytoplasmic cell extracts of RPE1 cells were subjected to pull-down assays with GST, GST-EB1 (EB1), or GST-EB3 (EB3) and were immunoblotted with antibodies as indicated. Recombinant GST products are visible in Ponceau S staining below. WB, Western blotting. (B) Analysis of EB3-GFP comets in Jurkat cells treated with DMSO or 100 µM D4476. The box plot shows the distribution of mean growth speeds of tracked EB3-GFP comets per cell. (C) Microtubules were depolymerized on ice in DMSO- or 50 µM D447-treated RPE1 cells. Cells were then shifted to 37°C for 10 min to allow microtubule polymerization. Cells are stained with anti–α-tubulin antibodies. Bar, 10 µm. (D) Number of EB3-GFP growth tracks in DMSO- or 25 µM D4476-treated RPE1 cells. The box plot shows the number of EB3-GFP growth tracks per cell. (E) Analysis of EB3-GFP comets in RPE1 cells treated with DMSO or 25 µM D4476. (left) The box plot shows distribution of mean growth speeds of tracked EB3-GFP comets per cell. (right) The table lists microtubule dynamic parameters by <t>plusTipTracker.</t> Pshrink indicates the probability of shrinkage at the end of grouped growth tracks. Pgrowth and Pfgap indicate the percentage of time all microtubules spend in growth or in pause between growth phases, respectively. **, P < 0.0001; # , P = 0.05 (using permutation t tests). In box plots, whiskers are set at 5–95 percentiles; horizontal lines mark the median, and boxes indicate interquartile range (25–75%).
Open Source Matlab Based Package (Wuflux), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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open-source matlab-based package (wuflux) - by Bioz Stars, 2026-03
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source matlab toolbox gait cad  (MathWorks Inc)
94
MathWorks Inc source matlab toolbox gait cad
Inhibition of CKI suppresses microtubule growth in epithelial cells. (A, left) Cytoplasmic cell extracts (CCE) of RPE1 cells were processed for immunoprecipitation (ip) with random IgG (control [con]) or anti-p150 glued (p150 glued ) antibodies. (right) Cytoplasmic cell extracts of RPE1 cells were subjected to pull-down assays with GST, GST-EB1 (EB1), or GST-EB3 (EB3) and were immunoblotted with antibodies as indicated. Recombinant GST products are visible in Ponceau S staining below. WB, Western blotting. (B) Analysis of EB3-GFP comets in Jurkat cells treated with DMSO or 100 µM D4476. The box plot shows the distribution of mean growth speeds of tracked EB3-GFP comets per cell. (C) Microtubules were depolymerized on ice in DMSO- or 50 µM D447-treated RPE1 cells. Cells were then shifted to 37°C for 10 min to allow microtubule polymerization. Cells are stained with anti–α-tubulin antibodies. Bar, 10 µm. (D) Number of EB3-GFP growth tracks in DMSO- or 25 µM D4476-treated RPE1 cells. The box plot shows the number of EB3-GFP growth tracks per cell. (E) Analysis of EB3-GFP comets in RPE1 cells treated with DMSO or 25 µM D4476. (left) The box plot shows distribution of mean growth speeds of tracked EB3-GFP comets per cell. (right) The table lists microtubule dynamic parameters by <t>plusTipTracker.</t> Pshrink indicates the probability of shrinkage at the end of grouped growth tracks. Pgrowth and Pfgap indicate the percentage of time all microtubules spend in growth or in pause between growth phases, respectively. **, P < 0.0001; # , P = 0.05 (using permutation t tests). In box plots, whiskers are set at 5–95 percentiles; horizontal lines mark the median, and boxes indicate interquartile range (25–75%).
Source Matlab Toolbox Gait Cad, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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sereega package  (MathWorks Inc)
90
MathWorks Inc sereega package
Inhibition of CKI suppresses microtubule growth in epithelial cells. (A, left) Cytoplasmic cell extracts (CCE) of RPE1 cells were processed for immunoprecipitation (ip) with random IgG (control [con]) or anti-p150 glued (p150 glued ) antibodies. (right) Cytoplasmic cell extracts of RPE1 cells were subjected to pull-down assays with GST, GST-EB1 (EB1), or GST-EB3 (EB3) and were immunoblotted with antibodies as indicated. Recombinant GST products are visible in Ponceau S staining below. WB, Western blotting. (B) Analysis of EB3-GFP comets in Jurkat cells treated with DMSO or 100 µM D4476. The box plot shows the distribution of mean growth speeds of tracked EB3-GFP comets per cell. (C) Microtubules were depolymerized on ice in DMSO- or 50 µM D447-treated RPE1 cells. Cells were then shifted to 37°C for 10 min to allow microtubule polymerization. Cells are stained with anti–α-tubulin antibodies. Bar, 10 µm. (D) Number of EB3-GFP growth tracks in DMSO- or 25 µM D4476-treated RPE1 cells. The box plot shows the number of EB3-GFP growth tracks per cell. (E) Analysis of EB3-GFP comets in RPE1 cells treated with DMSO or 25 µM D4476. (left) The box plot shows distribution of mean growth speeds of tracked EB3-GFP comets per cell. (right) The table lists microtubule dynamic parameters by <t>plusTipTracker.</t> Pshrink indicates the probability of shrinkage at the end of grouped growth tracks. Pgrowth and Pfgap indicate the percentage of time all microtubules spend in growth or in pause between growth phases, respectively. **, P < 0.0001; # , P = 0.05 (using permutation t tests). In box plots, whiskers are set at 5–95 percentiles; horizontal lines mark the median, and boxes indicate interquartile range (25–75%).
Sereega Package, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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sereega package - by Bioz Stars, 2026-03
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homer2 v. 2.3  (MathWorks Inc)
90
MathWorks Inc homer2 v. 2.3
Inhibition of CKI suppresses microtubule growth in epithelial cells. (A, left) Cytoplasmic cell extracts (CCE) of RPE1 cells were processed for immunoprecipitation (ip) with random IgG (control [con]) or anti-p150 glued (p150 glued ) antibodies. (right) Cytoplasmic cell extracts of RPE1 cells were subjected to pull-down assays with GST, GST-EB1 (EB1), or GST-EB3 (EB3) and were immunoblotted with antibodies as indicated. Recombinant GST products are visible in Ponceau S staining below. WB, Western blotting. (B) Analysis of EB3-GFP comets in Jurkat cells treated with DMSO or 100 µM D4476. The box plot shows the distribution of mean growth speeds of tracked EB3-GFP comets per cell. (C) Microtubules were depolymerized on ice in DMSO- or 50 µM D447-treated RPE1 cells. Cells were then shifted to 37°C for 10 min to allow microtubule polymerization. Cells are stained with anti–α-tubulin antibodies. Bar, 10 µm. (D) Number of EB3-GFP growth tracks in DMSO- or 25 µM D4476-treated RPE1 cells. The box plot shows the number of EB3-GFP growth tracks per cell. (E) Analysis of EB3-GFP comets in RPE1 cells treated with DMSO or 25 µM D4476. (left) The box plot shows distribution of mean growth speeds of tracked EB3-GFP comets per cell. (right) The table lists microtubule dynamic parameters by <t>plusTipTracker.</t> Pshrink indicates the probability of shrinkage at the end of grouped growth tracks. Pgrowth and Pfgap indicate the percentage of time all microtubules spend in growth or in pause between growth phases, respectively. **, P < 0.0001; # , P = 0.05 (using permutation t tests). In box plots, whiskers are set at 5–95 percentiles; horizontal lines mark the median, and boxes indicate interquartile range (25–75%).
Homer2 V. 2.3, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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homer2 v. 2.3 - by Bioz Stars, 2026-03
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Image Search Results


Inhibition of CKI suppresses microtubule growth in epithelial cells. (A, left) Cytoplasmic cell extracts (CCE) of RPE1 cells were processed for immunoprecipitation (ip) with random IgG (control [con]) or anti-p150 glued (p150 glued ) antibodies. (right) Cytoplasmic cell extracts of RPE1 cells were subjected to pull-down assays with GST, GST-EB1 (EB1), or GST-EB3 (EB3) and were immunoblotted with antibodies as indicated. Recombinant GST products are visible in Ponceau S staining below. WB, Western blotting. (B) Analysis of EB3-GFP comets in Jurkat cells treated with DMSO or 100 µM D4476. The box plot shows the distribution of mean growth speeds of tracked EB3-GFP comets per cell. (C) Microtubules were depolymerized on ice in DMSO- or 50 µM D447-treated RPE1 cells. Cells were then shifted to 37°C for 10 min to allow microtubule polymerization. Cells are stained with anti–α-tubulin antibodies. Bar, 10 µm. (D) Number of EB3-GFP growth tracks in DMSO- or 25 µM D4476-treated RPE1 cells. The box plot shows the number of EB3-GFP growth tracks per cell. (E) Analysis of EB3-GFP comets in RPE1 cells treated with DMSO or 25 µM D4476. (left) The box plot shows distribution of mean growth speeds of tracked EB3-GFP comets per cell. (right) The table lists microtubule dynamic parameters by plusTipTracker. Pshrink indicates the probability of shrinkage at the end of grouped growth tracks. Pgrowth and Pfgap indicate the percentage of time all microtubules spend in growth or in pause between growth phases, respectively. **, P < 0.0001; # , P = 0.05 (using permutation t tests). In box plots, whiskers are set at 5–95 percentiles; horizontal lines mark the median, and boxes indicate interquartile range (25–75%).

Journal: The Journal of Cell Biology

Article Title: Casein kinase I delta controls centrosome positioning during T cell activation

doi: 10.1083/jcb.201106025

Figure Lengend Snippet: Inhibition of CKI suppresses microtubule growth in epithelial cells. (A, left) Cytoplasmic cell extracts (CCE) of RPE1 cells were processed for immunoprecipitation (ip) with random IgG (control [con]) or anti-p150 glued (p150 glued ) antibodies. (right) Cytoplasmic cell extracts of RPE1 cells were subjected to pull-down assays with GST, GST-EB1 (EB1), or GST-EB3 (EB3) and were immunoblotted with antibodies as indicated. Recombinant GST products are visible in Ponceau S staining below. WB, Western blotting. (B) Analysis of EB3-GFP comets in Jurkat cells treated with DMSO or 100 µM D4476. The box plot shows the distribution of mean growth speeds of tracked EB3-GFP comets per cell. (C) Microtubules were depolymerized on ice in DMSO- or 50 µM D447-treated RPE1 cells. Cells were then shifted to 37°C for 10 min to allow microtubule polymerization. Cells are stained with anti–α-tubulin antibodies. Bar, 10 µm. (D) Number of EB3-GFP growth tracks in DMSO- or 25 µM D4476-treated RPE1 cells. The box plot shows the number of EB3-GFP growth tracks per cell. (E) Analysis of EB3-GFP comets in RPE1 cells treated with DMSO or 25 µM D4476. (left) The box plot shows distribution of mean growth speeds of tracked EB3-GFP comets per cell. (right) The table lists microtubule dynamic parameters by plusTipTracker. Pshrink indicates the probability of shrinkage at the end of grouped growth tracks. Pgrowth and Pfgap indicate the percentage of time all microtubules spend in growth or in pause between growth phases, respectively. **, P < 0.0001; # , P = 0.05 (using permutation t tests). In box plots, whiskers are set at 5–95 percentiles; horizontal lines mark the median, and boxes indicate interquartile range (25–75%).

Article Snippet: The MATLAB-based open source software package plusTipTracker ( ) was downloaded and used according to the accompanying technical report to analyze videos of Jurkat and RPE1 cells transfected with EB3-GFP and acquired as described under image acquisition.

Techniques: Inhibition, Immunoprecipitation, Control, Recombinant, Staining, Western Blot